cleanup: replace console.log/warn with $console, remove commented-out code

Removed various commented-out code and replaced direct `console.log` and `console.warn` usage across the codebase with `$console` from "core" for standardized logging. Also adjusted linting rules in biome.json to enable warnings for `console.log` usage.

app/src/cli/commands/config.ts

@@ -8,6 +8,8 @@ export const config: CliCommand = (program) => {
       .option("--pretty", "pretty print")
       .action((options) => {
          const config = getDefaultConfig();
+
+         // biome-ignore lint/suspicious/noConsoleLog:
          console.log(options.pretty ? JSON.stringify(config, null, 2) : JSON.stringify(config));
       });
 };

app/src/cli/commands/copy-assets.ts

@@ -32,5 +32,6 @@ async function action(options: { out?: string; clean?: boolean }) {
    // delete ".vite" directory in out
    await fs.rm(path.resolve(out, ".vite"), { recursive: true });
 
+   // biome-ignore lint/suspicious/noConsoleLog:
    console.log(c.green(`Assets copied to: ${c.bold(out)}`));
 }

app/src/cli/commands/create/create.ts

@@ -43,10 +43,12 @@ export const create: CliCommand = (program) => {
 
 function errorOutro() {
    $p.outro(color.red("Failed to create project."));
+   // biome-ignore lint/suspicious/noConsoleLog:
    console.log(
       color.yellow("Sorry that this happened. If you think this is a bug, please report it at: ") +
          color.cyan("https://github.com/bknd-io/bknd/issues"),
    );
+   // biome-ignore lint/suspicious/noConsoleLog:
    console.log("");
    process.exit(1);
 }
@@ -55,7 +57,14 @@ async function onExit() {
    await flush();
 }
 
-async function action(options: { template?: string; dir?: string; integration?: string, yes?: boolean, clean?: boolean }) {
+async function action(options: {
+   template?: string;
+   dir?: string;
+   integration?: string;
+   yes?: boolean;
+   clean?: boolean;
+}) {
+   // biome-ignore lint/suspicious/noConsoleLog:
    console.log("");
    const $t = createScoped("create");
    $t.capture("start", {
@@ -96,10 +105,12 @@ async function action(options: { template?: string; dir?: string; integration?:
 
    $t.properties.at = "dir";
    if (fs.existsSync(downloadOpts.dir)) {
-      const clean = options.clean ?? await $p.confirm({
-         message: `Directory ${color.cyan(downloadOpts.dir)} exists. Clean it?`,
-         initialValue: false,
-      });
+      const clean =
+         options.clean ??
+         (await $p.confirm({
+            message: `Directory ${color.cyan(downloadOpts.dir)} exists. Clean it?`,
+            initialValue: false,
+         }));
       if ($p.isCancel(clean)) {
          await onExit();
          process.exit(1);
@@ -174,8 +185,6 @@ async function action(options: { template?: string; dir?: string; integration?:
          process.exit(1);
       }
 
-      //console.log("integration", { type, integration });
-
       const choices = templates.filter((t) => t.integration === integration);
       if (choices.length === 0) {
          await onExit();
@@ -261,9 +270,11 @@ async function action(options: { template?: string; dir?: string; integration?:
    $p.log.success(`Updated package name to ${color.cyan(ctx.name)}`);
 
    {
-      const install = options.yes ?? await $p.confirm({
-         message: "Install dependencies?",
-      });
+      const install =
+         options.yes ??
+         (await $p.confirm({
+            message: "Install dependencies?",
+         }));
 
       if ($p.isCancel(install)) {
          await onExit();

app/src/cli/commands/debug.ts

@@ -17,6 +17,7 @@ export const debug: CliCommand = (program) => {
 
 const subjects = {
    paths: async () => {
+      // biome-ignore lint/suspicious/noConsoleLog:
       console.log("[PATHS]", {
          rootpath: getRootPath(),
          distPath: getDistPath(),
@@ -27,6 +28,7 @@ const subjects = {
       });
    },
    routes: async () => {
+      // biome-ignore lint/suspicious/noConsoleLog:
       console.log("[APP ROUTES]");
       const credentials = getConnectionCredentialsFromEnv();
       const app = createApp({ connection: credentials });

app/src/cli/commands/run/platform.ts

@@ -1,6 +1,6 @@
 import path from "node:path";
 import type { Config } from "@libsql/client/node";
-import { config } from "core";
+import { $console, config } from "core";
 import type { MiddlewareHandler } from "hono";
 import open from "open";
 import { fileExists, getRelativeDistPath } from "../../utils/sys";
@@ -36,7 +36,7 @@ export async function startServer(
    options: { port: number; open?: boolean },
 ) {
    const port = options.port;
-   console.log(`Using ${server} serve`);
+   $console.log(`Using ${server} serve`);
 
    switch (server) {
       case "node": {
@@ -58,7 +58,8 @@ export async function startServer(
    }
 
    const url = `http://localhost:${port}`;
-   console.info("Server listening on", url);
+   $console.info("Server listening on", url);
+
    if (options.open) {
       await open(url);
    }

app/src/cli/commands/schema.ts

@@ -8,6 +8,7 @@ export const schema: CliCommand = (program) => {
       .option("--pretty", "pretty print")
       .action((options) => {
          const schema = getDefaultSchema();
+         // biome-ignore lint/suspicious/noConsoleLog:
          console.log(options.pretty ? JSON.stringify(schema, null, 2) : JSON.stringify(schema));
       });
 };

app/src/cli/commands/user.ts

@@ -169,6 +169,7 @@ async function token(app: App, options: any) {
    }
    $log.info(`User found: ${c.cyan(user.email)}`);
 
+   // biome-ignore lint/suspicious/noConsoleLog:
    console.log(
       `\n${c.dim("Token:")}\n${c.yellow(await app.module.auth.authenticator.jwt(user))}\n`,
    );